PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508628.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 197aa    MW: 22305.2 Da    PI: 9.5614
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79.2e-164898155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y GVr+++ +grW AeI+d s   ++ r +lg+f+ ae+Aa a++ a+k l+g
  XP_004508628.1 48 KKYLGVRQRP-SGRWIAEIKDSS---QKLRLWLGTFDRAEDAALAYDSAAKLLRG 98
                    5899******.7*********42...36***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.79E-3048108No hitNo description
PfamPF008477.5E-104998IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-1949107IPR016177DNA-binding domain
SMARTSM003803.9E-3149112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-2749107IPR001471AP2/ERF domain
PROSITE profilePS5103219.57249106IPR001471AP2/ERF domain
PRINTSPR003673.0E-75061IPR001471AP2/ERF domain
PRINTSPR003673.0E-77288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MENKETSKLV HQTENQNNQN IISLMPNKTD KSYETREEKK IPKISNNKKY LGVRQRPSGR  60
WIAEIKDSSQ KLRLWLGTFD RAEDAALAYD SAAKLLRGRN AKTNFQNNKG IMNTNQEEEY  120
FRILGKNPRA YQLLKHAVMK NHAVNDEIMM RDQVVEETIV CSIPDIEGSA GCSGISFGSS  180
KVYSSVFVAP SFSASHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1548105159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508628.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1378192e-61AC137819.22 Medicago truncatula chromosome 8 clone mth2-21i24, complete sequence.
GenBankAC1620312e-61AC162031.12 Medicago truncatula chromosome 8 clone mth2-194a22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508628.11e-148ethylene-responsive transcription factor RAP2-9-like
TrEMBLA0A1S2YR631e-146A0A1S2YR63_CICAR; ethylene-responsive transcription factor RAP2-9-like
STRINGXP_004508628.11e-147(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-18related to AP2 11