PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508574.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 347aa    MW: 40330.7 Da    PI: 8.482
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.51.4e-391102453133
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssasnsssgkaa 91 
                      k+drhski T++g+RdRR+Rls+++a++fF Lqd+LGf k+skt+eWLl+++k +ik+l++       sss+ sec  e+ +ss +n+ +++++
  XP_004508574.1 110 SKRDRHSKIKTAKGLRDRRMRLSLDVAKKFFGLQDMLGFEKASKTVEWLLNKSKLEIKQLAREknlqndSSSTTSEC--EEGVSSLDNNDHQQQQ 202
                     69*************************************************************88854433333555..5555555555555555 PP

             TCP  92 ksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                     k    k+++s+++ + +++++   r+kar+rarertr+k + +
  XP_004508574.1 203 KIMLvKRSSSTNKVSRKSAFNCIGREKARERARERTRQKLNAR 245
                     5555688888888998999999*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.2E-38110242IPR005333Transcription factor, TCP
PROSITE profilePS5136931.972111169IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.836224241IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MYSSNSSLNG NNNNLTGTSF CSSTPFTFES NSSSSTSKHH QNTCFPPSPF SFIQFPYDTF  60
EDNNQIFLLQ EQDDHIQMNV KNKEEEEDKG KTVLVVVDEH KKNVQRKRSS KRDRHSKIKT  120
AKGLRDRRMR LSLDVAKKFF GLQDMLGFEK ASKTVEWLLN KSKLEIKQLA REKNLQNDSS  180
STTSECEEGV SSLDNNDHQQ QQKIMLVKRS SSTNKVSRKS AFNCIGREKA RERARERTRQ  240
KLNARIRDVN IVDQSNSKQC VNNNNNNNNW NPFEECAVNN SSFDVKMINH EAKEHSELED  300
EENSLFINMT KWSPTFMFNN SSILQQHHQY AQFQCLEKPW EDYNNTI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508574.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508574.10.0transcription factor TCP12
TrEMBLA0A1S2YR210.0A0A1S2YR21_CICAR; transcription factor TCP12
STRINGXP_004508574.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.25e-21TCP family protein