PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507368.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 436aa    MW: 49106.6 Da    PI: 8.976
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.3e-18796298
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     k  + +++l+ ++l+lp +f++++gg+   s  +tl+ ++g +W+v l  +k+++++++++GW+eFv+   + +g  ++F+++g+s+f  +v +f+
  XP_004507368.1  7 HKLVL-PSTLQAKQLRLPDNFMRKYGGQ--ISPIVTLTVPDGSVWRVGL--KKSDNKFWFRDGWNEFVHRYSISTGYLLLFRYEGKSSF--NVNIFS 96
                    44444.45555567***********888..6679***************..*********************************99999..888875 PP

2B358.51.2e-18305395498
                     E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     vl ps+  + ++++lp  fae+h +g++     ++l+ ++gr+W v++ yr+++    l++GW eF  +n+L egD++vF+l g+++  l v+vf
  XP_004507368.1 305 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISDGRQWPVRCLYRGGR--AKLSQGWFEFSLENNLGEGDVCVFELLGTKDVVLQVTVF 394
                     78899******************877743...59999***********665555..66***************************9999999999 PP

                     - CS
              B3  98 r 98 
                     r
  XP_004507368.1 395 R 395
                     8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-22396IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-23396IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-19496No hitNo description
PROSITE profilePS5086313.422598IPR003340B3 DNA binding domain
SMARTSM010195.4E-19698IPR003340B3 DNA binding domain
PfamPF023621.5E-15996IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-25294396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-25295396IPR015300DNA-binding pseudobarrel domain
CDDcd100179.80E-23300395No hitNo description
SMARTSM010198.8E-17302397IPR003340B3 DNA binding domain
PROSITE profilePS5086313.831302397IPR003340B3 DNA binding domain
PfamPF023621.7E-16305395IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MPCPSFHKLV LPSTLQAKQL RLPDNFMRKY GGQISPIVTL TVPDGSVWRV GLKKSDNKFW  60
FRDGWNEFVH RYSISTGYLL LFRYEGKSSF NVNIFSLATS EINYQSSTAQ SSKEGPYYAK  120
CLKIFEELED EDSIELLDSM PSKLTPGPLQ NKAFSGSADK FTPGKSHSPP ALQNLFNASK  180
LNSINWGDGG NTLSSRSANS VDNHLTRDIG LQFNVVEFKK STEEVKLRAA IDEKVKKSAT  240
KKRKSVCEST DVQEPSSDHE DEVEMRNRFY ESASARKRTV TAEEREKAIN AAKEFEPTNP  300
FCRVVLRPSY LYRGCIMYLP SCFAEKHLNG VSGFIKLQIS DGRQWPVRCL YRGGRAKLSQ  360
GWFEFSLENN LGEGDVCVFE LLGTKDVVLQ VTVFRITGDE GPLSPPPLQQ NQHVRPAKLL  420
TSPFQHHLTS TKLHGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-7226839615142B3 domain-containing transcription factor VRN1
4i1k_B2e-7226839615142B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507368.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507368.10.0B3 domain-containing transcription factor VRN1-like isoform X1
SwissprotQ8L3W11e-129VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A1S2YNC40.0A0A1S2YNC4_CICAR; B3 domain-containing transcription factor VRN1-like isoform X1
STRINGXP_004507368.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-75related to vernalization1 1
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]