PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004506485.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 332aa    MW: 37118.2 Da    PI: 6.1316
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004506485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011425223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    kC+ C +sFs+   L  H+r+H
  XP_004506485.1  4 KCKLCFRSFSNGRALGGHMRSH 25
                    7********************9 PP

2zf-C2H212.60.00042200222123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC  C+k+F++   L  H  +H
  XP_004506485.1 200 YKCDTCNKMFRSYQALGGHRASH 222
                     9***********99999998887 PP

3zf-C2H212.20.00057253275123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C ++F++   L  H rtH
  XP_004506485.1 253 HECPVCYRVFNSGQALGGHKRTH 275
                     79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.95325IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201330IPR007087Zinc finger, C2H2
PfamPF139124.2E-5425IPR007087Zinc finger, C2H2
PROSITE patternPS000280525IPR007087Zinc finger, C2H2
PfamPF139125.7E-12199224IPR007087Zinc finger, C2H2
SuperFamilySSF576671.84E-8199275No hitNo description
PROSITE profilePS5015710.284200227IPR007087Zinc finger, C2H2
SMARTSM003550.028200222IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
PfamPF139121.3E-12253275IPR007087Zinc finger, C2H2
SMARTSM003550.18253275IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39253275IPR007087Zinc finger, C2H2
PROSITE patternPS000280255275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEKKCKLCFR SFSNGRALGG HMRSHVMNLP IPPKPKGSPP PTIQLSFEAE SASSPSSSSS  60
YGLRDKPKRS FLFTDPNQFI ESSSEILQDR ESETESSKNP TRPRSKRVKK LDTVKPNESV  120
LSSASDITTE EDIALCLMLL SRDSNNNWKT KPQTQPKHQE YEEEKQKSDE NEDEEEESEA  180
EPEEIKPFKA KNTKKLRARY KCDTCNKMFR SYQALGGHRA SHKKIKLIND EIGVDSEEEK  240
ININNINGES KIHECPVCYR VFNSGQALGG HKRTHGIVGS TTIATVTTNS EVRSSVKFGN  300
SFIDLNLPAP TDDDDDDVSQ IEGSAVSDAE FV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004506485.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506485.10.0zinc finger protein ZAT9-like
TrEMBLA0A1S2YL880.0A0A1S2YL88_CICAR; zinc finger protein ZAT9-like
STRINGXP_004506485.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.18e-50C2H2-like zinc finger protein