PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004506079.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 268aa    MW: 29398.7 Da    PI: 6.349
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004506079.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022183205123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_004506079.1 183 HECSICGSEFTSGQALGGHMRRH 205
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.52E-6180207No hitNo description
PROSITE profilePS5015710.014183210IPR007087Zinc finger, C2H2
PfamPF139123.4E-11183206IPR007087Zinc finger, C2H2
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEEFSNEEKF VDATSIAKGK RTKRLRFLSS CGVASTLMTS SCSSDDENEY FDDLEEEDDE  60
DMANCLILLA QGGSYQKQHS GGGDDGNDNN IAEKGSNGKK KIALGGHRAS HKKLKIMAEE  120
KRASLQLPEP RSYLSHDSQP IKLVAKSDEF EEGKEPRGGP TISSLQMGNH GLKAFYGNKH  180
KIHECSICGS EFTSGQALGG HMRRHRTSSA NASIIVDNDG GVRPRNILQL DLNLPAPEDD  240
LRETKFQFQT KNTSMVMSAS PTLVGCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004506079.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506079.10.0zinc finger protein ZAT5
TrEMBLA0A1S2YKB10.0A0A1S2YKB1_CICAR; zinc finger protein ZAT5
STRINGXP_004506079.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-35C2H2 family protein