PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505518.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 352aa    MW: 39417.9 Da    PI: 6.9427
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505518.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1097.1e-34221192105
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 
                     +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i++l++++  ++s+ ++ ++++     + ++ ++s   
  XP_004505518.1  22 TGKKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKHSIDKLADLPPWHPSSDNQTQQQQ-----NVAAGSTSLV- 110
                     79**************************************************************433331111112222.....2221122221. PP

             TCP  97 skksqksaa 105
                       ++q++++
  XP_004505518.1 111 IGEQQSQSN 119
                     111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-3022131IPR005333Transcription factor, TCP
PROSITE profilePS5136931.9262482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MRRSSRGGEI VEVEGGHIVR STGKKDRHSK VYTSKGPRDR RVRLSAHTAI EFYDVQDRLG  60
YDRPSKAVDW LIKKAKHSID KLADLPPWHP SSDNQTQQQQ NVAAGSTSLV IGEQQSQSNS  120
GYNFHLLRHF TDNQCDNNNS SFISQHAVET DPIPFFPTTS STSQPINFQT YPHHHGIIST  180
NNIHSTQDLG LSLHSFQDHN GLINPWQSQQ QDCQNHATSN QNQTLFAGFE NQYQRIVNWN  240
SETTTDYVKK VGFMVNSQQF LPHGSTSASE YSPNETLQSN FSPSVRSWND IPMASSEHHR  300
TEQVHQASIF GSRFVCDGLA GFCVPDTVQG DEEGHGVSSN RPSSASPTSH HH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-222982154Putative transcription factor PCF6
5zkt_B5e-222982154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505518.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505518.10.0transcription factor TCP4
TrEMBLA0A1S2YJM20.0A0A1S2YJM2_CICAR; transcription factor TCP4
STRINGXP_004505518.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.11e-46TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3