PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505238.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 283aa    MW: 31562.7 Da    PI: 7.1101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-1173116855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Er RR+++++ f+ L  llP++   p  K +K++i+  Av++Ik+Lq
  XP_004505238.1  73 TERERRKKMRNMFSGLHALLPQL---P-SKADKSTIVDAAVKHIKNLQ 116
                     6*********************6...3.8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-1565136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.14865115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1469129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.24E-1270117No hitNo description
PfamPF000107.8E-973116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-873121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAMSVDHDEG VHLGLVWENE AVDLTNSDTS GESSKQKLEM KAMREKEGIK KRSDGEGKDG  60
KYRDSDHEIH IWTERERRKK MRNMFSGLHA LLPQLPSKAD KSTIVDAAVK HIKNLQQTLE  120
KLEKEKEKRL KSVSSFGSES SIINSHWHPY ESREAIIADQ GSSNYNFPSN AIVTSNPSNA  180
FSTPPPQVAF QTWSSQNVVL NICGGEAQFC ICATKKPGLM TTIAFVLEKH RIDVISANIV  240
CNGNGNFYMI LAHAKQASHQ LQDANSMEET YKQAAGEIMI LIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505238.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1485281e-139AC148528.15 Medicago truncatula clone mth2-53h4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505238.10.0transcription factor bHLH95
TrEMBLA0A1S2YIW10.0A0A1S2YIW1_CICAR; transcription factor bHLH95
STRINGXP_004505238.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.17e-46bHLH family protein