PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504883.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 310aa    MW: 35519.5 Da    PI: 6.0601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504883.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12135181455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L  l+P +     +K++Ka++L  A++Y+++Lq
  XP_004504883.2 135 YHIIAERKRREKLSERFIALSALVPGL-----QKMDKATVLGDAIKYLRQLQ 181
                     6999**********************9.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.253131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17134201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-10135181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-18136199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-12136185No hitNo description
SMARTSM003532.5E-15137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MENISFIRGF PDLEILEDPS FFLHQWHSNS IDESNSLPIA AAFGDTLQHH SYIYPNFNHR  60
TSVETAQTLE AQFISYPNLL SFDDSYQINQ FGLVKPKDEM VCPKNISKNS SDMISKGTLE  120
AKKIATRPKL SQPQYHIIAE RKRREKLSER FIALSALVPG LQKMDKATVL GDAIKYLRQL  180
QEKVRALEEE QNMKKNMESV VVVKKSQLRD DVENSSSESD GSFDEELPEI EARFCDRNVL  240
IRVHCEKSNG VLEKIIHEIE RLHLKVTNSS VMTFGSCALD ITIIAQMDME FCMTVKDFVR  300
NLRSAFTSFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14132200574Transcription factor MYC2
5gnj_B3e-14132200574Transcription factor MYC2
5gnj_E3e-14132200574Transcription factor MYC2
5gnj_F3e-14132200574Transcription factor MYC2
5gnj_G3e-14132200574Transcription factor MYC2
5gnj_I3e-14132200574Transcription factor MYC2
5gnj_M3e-14132200574Transcription factor MYC2
5gnj_N3e-14132200574Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144ERKRRE
2140145RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504883.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504883.20.0transcription factor bHLH25-like
SwissprotQ9T0723e-60BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1S2YIA40.0A0A1S2YIA4_CICAR; transcription factor bHLH25-like
STRINGXP_004504883.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-57bHLH family protein