PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504766.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 193aa    MW: 22444.8 Da    PI: 4.8069
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504766.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.73.9e-35101291128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeel+v++L++k++  +++  +vi+++d++ ++Pw+L+ ++ +e ++wy++s+r         +nr+t++gyW   g +++v+++
  XP_004504766.1  10 LPPGFRFYPTDEELLVHFLHRKASLLPCHP-DVIPDLDLFPYDPWELHGRALEEGNQWYYYSRRT--------QNRITNNGYWMPMGMEEQVVTT 95 
                     79*************************999.99**************977778899******984........589************9999987 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++  g+kk  vf+ g++p+g+kt+W+m+eyrl
  XP_004504766.1  96 sTNKRLGIKKYYVFHLGQTPNGNKTNWIMQEYRL 129
                     67788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-467161IPR003441NAC domain
PROSITE profilePS5100544.76710162IPR003441NAC domain
PfamPF023653.2E-2111129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGDNNNNVNL PPGFRFYPTD EELLVHFLHR KASLLPCHPD VIPDLDLFPY DPWELHGRAL  60
EEGNQWYYYS RRTQNRITNN GYWMPMGMEE QVVTTSTNKR LGIKKYYVFH LGQTPNGNKT  120
NWIMQEYRLS DSASSSRSSS SKRKSQPKSE HSRWVICRVY ESDDDEDGDG TELSCLDEVF  180
LSLDDLDEVS LPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-38316110164NO APICAL MERISTEM PROTEIN
1ut4_B1e-38316110164NO APICAL MERISTEM PROTEIN
1ut7_A1e-38316110164NO APICAL MERISTEM PROTEIN
1ut7_B1e-38316110164NO APICAL MERISTEM PROTEIN
3swm_A1e-38316113167NAC domain-containing protein 19
3swm_B1e-38316113167NAC domain-containing protein 19
3swm_C1e-38316113167NAC domain-containing protein 19
3swm_D1e-38316113167NAC domain-containing protein 19
3swp_A1e-38316113167NAC domain-containing protein 19
3swp_B1e-38316113167NAC domain-containing protein 19
3swp_C1e-38316113167NAC domain-containing protein 19
3swp_D1e-38316113167NAC domain-containing protein 19
4dul_A1e-38316110164NAC domain-containing protein 19
4dul_B1e-38316110164NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504766.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104232e-64AP010423.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT16M14, TM1779, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504766.11e-144NAC domain-containing protein 104
SwissprotQ8GWK67e-85NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1S2YH741e-142A0A1S2YH74_CICAR; NAC domain-containing protein 104
STRINGXP_004504766.11e-143(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-78xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]