PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504059.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 313aa    MW: 35747 Da    PI: 4.9939
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504059.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-20124174256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  XP_004504059.1 124 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAAFAYDNAAYKLRGE 174
                     59******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.27E-33123182No hitNo description
SMARTSM003805.2E-36124187IPR001471AP2/ERF domain
PROSITE profilePS5103223.09124181IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-23124182IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-31124181IPR001471AP2/ERF domain
PRINTSPR003675.1E-11125136IPR001471AP2/ERF domain
PfamPF008472.2E-13125174IPR001471AP2/ERF domain
PRINTSPR003675.1E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTTTIDIYKY NSDTNITHGF LDPFNEELMK ALEPFMKNDS SSISSFPHEK SNFPSNLNSN  60
YLRHETQTSS IGLNQLTPSQ ILQIQTQIQI QQNADSFKPP QKNHLAQKPV PMKHFGNPSK  120
PTKLYRGVRQ RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA AFAYDNAAYK LRGEFARLNF  180
PYMRHNGNYN PLPSSVDSKL QAICESLAIS QKQGSQEMLC SSVEEVKPRF CVPNMIELES  240
DVAQSKGEFE FVCSEFEDFK VEKTVLSDEC SPGLSSPESG VTFLDFSDSS QWDEVENFGL  300
EKYPSVEIDW EAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21123181160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-21123187469ATERF1
3gcc_A2e-21123187469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504059.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4439661e-106GU443966.1 Trifolium repens clone BAC 113f04 bristled-like protein, ethylene insensitive-like protein, bZIP transcription factor, acyl-coA oxidase, and dehydration responsive element binding protein genes, complete cds; and unknown gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504059.10.0ethylene-responsive transcription factor ERF060
SwissprotO656654e-85ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A1S2YFI50.0A0A1S2YFI5_CICAR; ethylene-responsive transcription factor ERF060
STRINGXP_004504059.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.19e-72ERF family protein