PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 340aa    MW: 38996.8 Da    PI: 4.3039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11178221654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr ++Pk +      K++  +iL  +++Y+k+L
  XP_004501060.1 178 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTAILGDTIDYMKEL 221
                     589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.977172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.81E-4173225No hitNo description
SuperFamilySSF474598.11E-15175234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-9178221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-15179235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00142266304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEFYDENFME ELMALRRETY ETNPSQEENY QFLSSSHNNN NLSFDSFDQN SFSYLPNSSC  60
IQQVPQSFND INEYSYTFNE IDGSLLLDES STTPQILDSY YNSTLLDAPF ISQEDFPLSM  120
IAEEDPCLLG EELQNLELQT TCKMEPTQSP EMPVFNTSSS SERKNPSKKL QGKPSKNLMA  180
ERRRRKRLND RLSMLRAIVP KISKMDRTAI LGDTIDYMKE LLEKINNLQQ EIELDSNMTS  240
FINDVKQNEI LIRNSPKFEV ERSGDTRVEI CCAGKPGLLL STVNTLEALG LEIQQCVISC  300
FNDFRMQASC SEELERRTML SSEDIKQALF RSAGYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180187ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1489821e-111BT148982.1 Medicago truncatula clone JCVI-FLMt-13F18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501060.10.0transcription factor bHLH93-like
SwissprotQ9LSL12e-78BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A1S2YA270.0A0A1S2YA27_CICAR; transcription factor bHLH93-like
STRINGXP_004501060.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-80beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]