PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500989.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 382aa    MW: 42394 Da    PI: 7.2318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.1e-052703081255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  XP_004500989.1 270 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 308
                     7788899*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.719258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.66E-5268312No hitNo description
SuperFamilySSF474593.66E-11268323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-9272324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MIMESTTNLQ QDQPSPVVDP SSSSASSSLS NSTPSYATIH SWNPNITLNN AGNFNSNLQE  60
ATNQRSRSCL IAHKSDMIQD LGYHNQWTSD EFSKEEISFA NFPKFTEMLN YTTPNNSTML  120
KTLLTEQDFY SSQSYNNPNF GGTNHIASSQ IHPSINISNL NHYSSSTTLD MNMQSLDLLT  180
TSPTSFTNTS QPHFGKFTHH DNNLSFHLHP MHHSSSSNSS NQSLLSNIGT VETKRGCTLM  240
ESKVSQSQTA LKKSRSSSES RPSCPPFKVR KEKLGDRIAA LQQLVAPFGK TDTASVLMEA  300
IGYIKFLQGQ VETLSVPYMK LSQNQNNRVM RGDSTTCDIN GEPKQDLRSR GLCLVPLSCM  360
SYIVTDGGTE PWQQHHNFGR PT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500989.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500989.10.0transcription factor bHLH110
TrEMBLA0A1S2Y8E20.0A0A1S2Y8E2_CICAR; transcription factor bHLH110
STRINGXP_004500989.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.19e-44bHLH family protein