PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500614.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 325aa    MW: 36072.4 Da    PI: 7.0068
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500614.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.6e-21137186255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  XP_004500614.1 137 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 186
                     59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.39E-35136196No hitNo description
PROSITE profilePS5103223.209137194IPR001471AP2/ERF domain
SMARTSM003807.7E-39137200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-32137195IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-23137194IPR016177DNA-binding domain
PfamPF008472.1E-14138186IPR001471AP2/ERF domain
PRINTSPR003672.9E-11138149IPR001471AP2/ERF domain
PRINTSPR003672.9E-11160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MATIMDFYNN TQLYSDPFRG ELMEVLEPFI KSSSTNSTPS PSPSSSSSSS SFTPFYTNDC  60
STSMTQNFIG FAQPSSSCSV LGLNHLTPSQ INQIQTQIQH QNFTQQQEQR FSNSLNFLGA  120
KAIPMKHVGN SSKPTKLYRG VRQRHWGKWV AEIRLPKNRT RLWLGTFDTA EEAALAYDKA  180
AFKLRGDFAR LNFPNLKHTG SCVVGGEFGE YKPLPSSVDA KLQAICEDLA QIQKQGKSEK  240
PTKKKTPSKL ASKPVSTVTI PLEDSVDLKN VSDNCCKVEV SFSSEGSSPL SDLTFGDVGE  300
PQWEGDSDNF NLLKYPSYEI DWDSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23136194160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500614.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1377185e-42BT137718.1 Medicago truncatula clone JCVI-FLMt-16E12 unknown mRNA.
GenBankCU6515665e-42CU651566.9 M.truncatula DNA sequence from clone MTH2-180F23 on chromosome 3, complete sequence.
GenBankJN5958925e-42JN595892.1 Medicago truncatula putative AP2/EREBP transcription factor (WXP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500614.10.0ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E43e-92RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1S2Y8P50.0A0A1S2Y8P5_CICAR; ethylene-responsive transcription factor RAP2-4
STRINGXP_004500614.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-63related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]