PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500573.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 126aa    MW: 14204.3 Da    PI: 6.6486
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500573.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.13.6e-4481071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+C+kdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++reda+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la
  XP_004500573.1   8 PCASCKLLRRRCTKDCIFAPYFPSHDPHKFAIVHKVFGASNVSKMLQELPCDQREDAVSSLVYEAHARMRDPVYGCVGAISYLQNQVSELQMQLA 102
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_004500573.1 103 VAQAE 107
                     99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.8147108IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-448105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MGGNTNSPCA SCKLLRRRCT KDCIFAPYFP SHDPHKFAIV HKVFGASNVS KMLQELPCDQ  60
REDAVSSLVY EAHARMRDPV YGCVGAISYL QNQVSELQMQ LAVAQAEMLC IQMEHEYDSL  120
SRETIF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR3786625e-49CR378662.1 M.truncatula DNA sequence from clone MTH2-41N19 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500573.17e-92PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW36e-71LBD12_ARATH; LOB domain-containing protein 12
TrEMBLG7J2B81e-73G7J2B8_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGGLYMA02G43030.11e-71(Glycine max)
STRINGPOPTR_0008s07280.12e-71(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.14e-72LBD family protein