PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499467.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 357aa    MW: 40421.8 Da    PI: 8.5014
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499467.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.21.8e-31501722105
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec..eaess 78 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl+ ak++i+el+ +                +         ++++s
  XP_004499467.1  50 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNVAKHEIDELPPLpnfpshgnfnfgfpsiN------IeaNTNTS 138
                     689*************************************************************75555555555333321......12344455 PP

             TCP  79 sssasnsssg.................kaaksaakskksqksaa 105
                     + +++  +++                            ++k+ +
  XP_004499467.1 139 QLNQQLLNINrnipwegstssqnsmwkL----------KPKEVT 172
                     5555533333445576543322222220..........222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.99752110IPR017887Transcription factor TCP subgroup
PfamPF036341.4E-2952182IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MIKNSKEALK QEGHSNSNND EKEKASSSNS LASQWSRLKD PRIVRVSRAF GGKDRHSKVC  60
TIRGLRDRRV RLSVPTAIQL YDLQDRLGLN QPSKVVDWLL NVAKHEIDEL PPLPNFPSHG  120
NFNFGFPSIN IEANTNTSQL NQQLLNINRN IPWEGSTSSQ NSMWKLKPKE VTQEMVIDNK  180
ANYWMNRIEE DDDNNNKHGS NEGNNSSDHV LSSNNNNLLL QRTNHQASFL GLLNTMPSMG  240
NYQWGGNSNV DVNSQLGNHI GFTNQTNVNV VTSLPPMLSL STGNSQMMPY FPSHHHVNAM  300
EMDNHHHQRQ INHHNYQMLS SSSQNPLNNS LNNPSFNLAM MIPKENPSNK DQDFTPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1857111155Putative transcription factor PCF6
5zkt_B1e-1857111155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499467.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0524941e-100BT052494.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-J-6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499467.10.0transcription factor TCP5-like
TrEMBLA0A1S2Y6990.0A0A1S2Y699_CICAR; transcription factor TCP5-like
STRINGXP_004499467.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-44plastid transcription factor 1