PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499266.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 249aa    MW: 27467.4 Da    PI: 5.3077
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499266.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-183988255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a++aa++kl+g
  XP_004499266.1 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSHEAALAYDAAARKLYG 88
                    69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.08E-223898No hitNo description
SMARTSM003801.4E-3539102IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-213996IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-303997IPR001471AP2/ERF domain
PROSITE profilePS5103222.4313996IPR001471AP2/ERF domain
PfamPF008471.4E-133988IPR001471AP2/ERF domain
PRINTSPR003671.2E-94051IPR001471AP2/ERF domain
PRINTSPR003671.2E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MLKSGIGIEE RKQLKKPAQA SSRKGCMRGK GGPENASCTY KGVRQRTWGK WVAEIREPNR  60
GARLWLGTFE TSHEAALAYD AAARKLYGSD AKLNLPELSV TTNSTTTQQI PQINIPHNNN  120
NIKNFSVSST VHNNNSCFNN NNNNTNNSVF GAIYSSSDNS IVSIPLEQQV VESSYTKHMD  180
HSDSFFGTVN YESTMPVVDD DSIWTEAAMS LDAAISMDFP MISDDDGIYS TGNFSEVAAW  240
DSLQTPWCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-204096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499266.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1595351e-110AC159535.12 Medicago truncatula clone mth2-152f22, complete sequence.
GenBankAC1600131e-110AC160013.22 Medicago truncatula clone mth2-162b23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499266.10.0dehydration-responsive element-binding protein 2D
TrEMBLA0A1S2Y4I80.0A0A1S2Y4I8_CICAR; dehydration-responsive element-binding protein 2D
STRINGXP_004499266.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-42ERF family protein