PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498177.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 434aa    MW: 49413.7 Da    PI: 8.8797
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-1614961098
                    HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    +l+s++l++p +f++++g +   s   tl+ ++g +W++ l  +k ++r+++ +GW++Fv+   +  g f+vF+++g+s+f   v++f+
  XP_004498177.1 14 TLQSRQLRIPDNFLRKYGAQ--LSAIATLTVPDGTVWRLGL--KKVDNRIWFVDGWQDFVQRYSIGIGYFLVFMYEGSSSF--IVHIFN 96
                    455667***********977..8999***************..*********************************99999..999986 PP

2B361.11.8e-19303393498
                     E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     vl ps+  + ++++lp  fae++ +g++     ++l++++gr+W v++ yr+++    l++GW eF  +n+L egD++vF+l ++++  l v++f
  XP_004498177.1 303 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQTPDGRQWPVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCVFELLRTRDVVLQVTLF 392
                     78899******************877743...5***************665555..66***********************99999988999998 PP

                     - CS
              B3  98 r 98 
                     r
  XP_004498177.1 393 R 393
                     7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-21398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-23397IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-18496No hitNo description
PROSITE profilePS5086312.971598IPR003340B3 DNA binding domain
SMARTSM010193.3E-16698IPR003340B3 DNA binding domain
PfamPF023621.5E-141496IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-24292393IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-25293393IPR015300DNA-binding pseudobarrel domain
CDDcd100173.19E-23298393No hitNo description
SMARTSM010192.1E-21300395IPR003340B3 DNA binding domain
PROSITE profilePS5086314.339300395IPR003340B3 DNA binding domain
PfamPF023629.1E-18303393IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MPRPSFHKLI LPITLQSRQL RIPDNFLRKY GAQLSAIATL TVPDGTVWRL GLKKVDNRIW  60
FVDGWQDFVQ RYSIGIGYFL VFMYEGSSSF IVHIFNMSTS ELNYQSAMRS RNEGPCYPNY  120
HHIFDEMEDV DSFDFLDSSP SNLTPGALQD KVFAGSIDQL SQGKNHTPSL QNLFNGGSKL  180
NRVNWGDIGG ALSSKSPNQS TRDIGVQFNA VEFKKSTEEL KLRYPNEEGV NNNSSNKPAR  240
KKRKSELKDA QEPSGDNEDE AEMRYRFYES ASARKRTVTA EERERAINDA KAFEPSNPFC  300
RVVLRPSYLY RGCIMYLPSC FAEKNLNGVS GFIKLQTPDG RQWPVRCLYR GGRAKLSQGW  360
YEFTLENNLG EGDVCVFELL RTRDVVLQVT LFRVAEDESG LFNPSMQPNQ NVSHAKLLNP  420
HLQHRISTTK SVKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-7326639615144B3 domain-containing transcription factor VRN1
4i1k_B3e-7326639615144B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498177.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498177.10.0B3 domain-containing transcription factor VRN1-like
SwissprotQ8L3W11e-124VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A1S2Y2520.0A0A1S2Y252_CICAR; B3 domain-containing transcription factor VRN1-like
STRINGXP_004498177.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-127B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]