PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498112.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 230aa    MW: 25057 Da    PI: 9.3369
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.31.1e-37331872119
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                     a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ ++++        +        
  XP_004498112.1  33 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSEHKPFL-----Ppspfilgk 122
                     689*************************************************************88888666111111111.....122333444 PP

             TCP  89 ...................................................kaaksaakskksqksaasalnlakesrakar 119
                                                                        +               +  + ++++++++++
  XP_004498112.1 123 rlrseqddavavaahpappalwrpdfaqlwsfaaaaqpppevlsispqqqqH---------------N--SLFHHQQQQQQQ 187
                     4444455566677777778888888888888887654444444443332211...............2..222221111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.5E-3339188IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2093993IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSNCKETTNA VTITNGATTT TTEPETTQRN TIAVKKPPSK DRHSKVDGRG RRIRMPIICA  60
ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSSLSEHK PFLPPSPFIL  120
GKRLRSEQDD AVAVAAHPAP PALWRPDFAQ LWSFAAAAQP PPEVLSISPQ QQQHNSLFHH  180
QQQQQQQQHQ ASMGEASAAR LGNYLPGHLN LLASLSGGNG NSGRDDDEHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498112.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498112.11e-170transcription factor TCP7-like
SwissprotQ9FMX29e-75TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A1S2Y3821e-169A0A1S2Y382_CICAR; transcription factor TCP7-like
STRINGXP_004498112.11e-170(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.14e-50TCP family protein