PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498111.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 226aa    MW: 24443.3 Da    PI: 9.7933
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.41e-37261882122
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                     a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ ++++  +     +        
  XP_004498111.1  26 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSEHKPFH-----Ppspfilgk 115
                     689*************************************************************88888666211111111.....122344455 PP

             TCP  89 ........................................kaaksaa.kskksqksaasalnlakesrakarara 122
                                                             ++ +s+  + +++q++++  + ++++++++++ +a
  XP_004498111.1 116 rlrseqddavsvaaptappalwalpsrpdfaqlwsfaaaaAQPPSEVlSISPQQQQHN--SLFHHQQQQQQQHQA 188
                     5555555666677778888888888888888888888886333333323333333333..333333333333222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.2093286IPR017887Transcription factor TCP subgroup
PfamPF036346.7E-3332186IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSNCKETTNA VTVTNGTTTD SQKTIAVKKP PSKDRHSKVD GRGRRIRMPI ICAARVFQLT  60
RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPASFSSLS EHKPFHPPSP FILGKRLRSE  120
QDDAVSVAAP TAPPALWALP SRPDFAQLWS FAAAAAQPPS EVLSISPQQQ QHNSLFHHQQ  180
QQQQQHQASM GEASAARLGN YLPGHLNLLA SLSGNGNSGR GDDEHH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498111.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498111.11e-167transcription factor TCP7-like
SwissprotQ9FMX21e-79TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A1S2Y2061e-166A0A1S2Y206_CICAR; transcription factor TCP7-like
STRINGXP_004498111.11e-166(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.18e-50TCP family protein