PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496702.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 411aa    MW: 46962.8 Da    PI: 7.1946
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP145.44.2e-451162573135
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec....eaesssssasns 85 
                     gkkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t+eWL+++++ aikel++t        +  +   +    +++++++++   
  XP_004496702.1 116 GKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIKELARTknigccnnN--N--PFeydtNNNNNHKNS--- 203
                     89*************************************************************777654321..2..221121223333333... PP

             TCP  86 ssg.....kaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135
                       +     ++++  +  +  +qk++a + + +kesr++arararert  km+ ++ 
  XP_004496702.1 204 --SfsgvgDNKQGRNkLKWTQQKEEAFVVQTKKESRERARARARERTCYKMCSTST 257
                     ..2345654444444245555555555888888*******************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.8E-40116254IPR005333Transcription factor, TCP
PROSITE profilePS5136935117175IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.643234251IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MFSSTYHDSN PLPNFPSSSS SSYPTLSFLI DPQNDFPNNT LLDDPLSLPF LPSTTTTHDV  60
LPIFPNETTI NANNLATSLF EQDISTSTNV NNCNSNYGVS VVPNFVTQKL PSSTIGKKDR  120
HSKIHTSQGL RDRRVRLSSE IARKFFDLQD MLEFDKPSNT LEWLFTKSES AIKELARTKN  180
IGCCNNNNPF EYDTNNNNNH KNSSFSGVGD NKQGRNKLKW TQQKEEAFVV QTKKESRERA  240
RARARERTCY KMCSTSTNGS STNHHHHNHN QMLQQLMMSS SSPIDHQSST ENDEAYARWR  300
QHLVQLQTYH PSTYSHHNLL DESEIPRDHY GFNVIEESIM IKRNMMSSTS SHHHHQQNLA  360
TIPKEPTFNN NNIIDYPNLF PYSTTNWETN GGCSNFYGIA TMNLSTCFMN Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236246RERARARARER
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496702.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5749155e-61EU574915.1 Pisum sativum cultivar JI992 keeled wing mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496702.10.0transcription factor CYCLOIDEA-like
TrEMBLA0A1S2Y0U00.0A0A1S2Y0U0_CICAR; transcription factor CYCLOIDEA-like
STRINGXP_004496702.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-25TCP family protein