PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496621.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 337aa    MW: 35968 Da    PI: 4.9447
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.58.3e-3769144377
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaes 77 
                     ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+qa+p+i+e+tgt++ +a ++   ++
  XP_004496621.1  69 AAKKPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEQAEPSIIEATGTGTVPAIAVsVGGT 144
                     5799***********************************************************8888844421111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.5274128IPR017887Transcription factor TCP subgroup
PfamPF036343.0E-2974150IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEGNHTHDDD FSEENETQST SETTEPQTLN TPEPTSVMKE ELTETERHGI DESLSVGVLP  60
MPMPLTVSAA KKPSKDRHTK VEGRGRRIRM PATCAARIFQ LTRELGHKSD GETIRWLLEQ  120
AEPSIIEATG TGTVPAIAVS VGGTLKIPTS SPARPDGEEA PKKRRRRASN SEFIDVNEQV  180
SMCSGLAPIA QTAYGGAAGG SGGGIVPLWP VVSSGGSNAT GPFFMFPNST TNQPQFWAIP  240
AAPFFNVQNR PISDFVSAMH MQQPLNVASA FGNTNCSSTL APSLSSANTT TTTCSSAATS  300
SSSSQMLRDF SLEIYDKKEL QFMDSSASNL EPPPTSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166KKRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00064PBMTransfer from AT5G51910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496621.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496621.10.0transcription factor TCP9
RefseqXP_027189045.10.0transcription factor TCP9
TrEMBLA0A1S2XYS30.0A0A1S2XYS3_CICAR; transcription factor TCP9
STRINGXP_004496621.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.28e-71TCP family protein