PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496205.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 361aa    MW: 40785.3 Da    PI: 6.5462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496205.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.66.3e-15171217354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L +++e++k+L
  XP_004496205.1 171 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIEHVKEL 217
                     79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.984168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-12171217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-15172226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-15172224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-13174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-5181220No hitNo description
Gene3DG3DSA:3.30.70.2606.2E-4256322No hitNo description
CDDcd048737.53E-7256308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MIQEDQGQCS SQAINNNFET YHQEQFLLQQ QQQMRQQNSH DHHHIYGGGR SSSLNNMFHG  60
HEVSPILQPW SMQQLHNHHH HQTFNHDNPF LIPQQQQQQQ SSSPYASLFN RRVINPSSLQ  120
FAYDNNPSSE HLRIISDTVL NGSGVPFGLQ GEIGKMSAQE IMEAKALAAS KSHSEAERRR  180
RERINNHLAK LRSLLPSTTK TDKASLLAEV IEHVKELKRQ TSLIAETCPV PTECDELTVD  240
AADQEHGNGK FVIKASLCCD DRSDLLPELI KTLKALRLRT LKADITTLGG RVKNVLFITG  300
EDDDDHDEYS NNSEEHGHQN LQYCITSIQE AFRGVMEKSL ADDSASGNVK RQRTNIISIS  360
N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465704e-89AC146570.7 Medicago truncatula clone mth2-103j7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496205.10.0transcription factor bHLH30
SwissprotQ9S7Y12e-92BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1S2XXY30.0A0A1S2XXY3_CICAR; transcription factor bHLH30
STRINGXP_004496205.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]