PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495812.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 723aa    MW: 76977.7 Da    PI: 6.9527
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16474520455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  XP_004495812.1 474 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 520
                     6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.54E-17466524No hitNo description
Gene3DG3DSA:4.10.280.109.4E-21467528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-21467530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349470519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13474520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18476525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MPLYELYRLA RENLGNETNN TSVADQPSES ENDFFELVWE SGQISSQGQS SRVRKSPSCR  60
SFPSHCLPSH SPRGRDKDIG VGGYGNNPRT GKFGDLETGL NEIPMSVPSH VVDVGQDEDM  120
MPWLDYSMDG SFQNEYGSNF LHELPSVAGN NLPAASNNFT LLDKRSNGNQ IFRKSHKNSA  180
EPMNVSRGSS AEPVETARLN KASTSQLYPP STSFLTVRSR ASDVAENNNA SNANQDVPYG  240
EITRITSSSS DFPSLKVQKQ DPKMPGNSSS LMNFSHFARP AAIVRANLQN ISLKSGLVSA  300
SARSDSIAVK NKGAASTSSN PPDSTLVNSS GDCSKEPETR CQKVAEQPKV DLKPLQPKSL  360
ELKVVASKQS EPACKESGVK NDQPSNQVLG DGVAKGQTTV EKGVEVAVAS SSVCSGNGAD  420
RGSDDPNQNL KRKSRDTEDS ECHSEDVEDE SVVVKKGASG RGVIGSKRSR AAEVHNLSER  480
RRRDRINEKM RALQELIPNC NKVDKASMLD EAIEYLKTLQ LQVQMMSMGA GLYMPPMMLP  540
AGMQHMHAPH MAAFSPLGVG MHMGLGMGYG MGIPDMNGGS SRFPMIQVPQ MQGAHIPVAH  600
MSGPSAIHGM ARSNPQGFGL QGQGISMPMP RAPVFPFSGG PIMNSSATGT SAYGSAGPVE  660
TVNPASASGS KDPTPNVDSQ IKQSTSGRDT TSQIPNQPAS VHNGGNVSVA DDSGTANPGN  720
ITL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1478483ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004495812.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495812.10.0transcription factor PIF3 isoform X2
TrEMBLA0A1S2XYU10.0A0A1S2XYU1_CICAR; transcription factor PIF3 isoform X2
STRINGXP_004495811.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-56phytochrome interacting factor 3