PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495741.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YC
Protein Properties Length: 256aa    MW: 28518.1 Da    PI: 6.2197
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495741.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.98.6e-55791821101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw +q   iek+tdfknh+lPlarikki+kadedvkmisaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+t tdifdfl
  XP_004495741.1  79 QLQAFWGNQyqeIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITGTDIFDFL 173
                     89****9999999********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivpr++l
  XP_004495741.1 174 VDIVPREDL 182
                     ******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.04E-3367173IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.8E-3793165IPR009072Histone-fold
PfamPF008082.5E-21101164IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDHQGHGQNP SMGVVGSGQM ATYGSNPYQP NHLTGSPGMV VPSVGTIQST GQPDGSQLGQ  60
HQLAYQHMHQ QQQQQQQQQL QAFWGNQYQE IEKVTDFKNH SLPLARIKKI MKADEDVKMI  120
SAEAPVVFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITGTDIF DFLVDIVPRE  180
DLKDEVLASI PRGTMPVAGP VDGLPYCYMP PQHAQQPGTA GLMMHNPNVY APQSHPYMAP  240
QMWPQPPDQQ QSSSDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B4e-4285179197NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182930.0JQ918293.1 Medicago truncatula nuclear transcription factor Y subunit C1 (NF-YC1) mRNA, complete cds.
GenBankAC1558970.0AC155897.35 Medicago truncatula clone mth2-41m18, complete sequence.
GenBankAC1365030.0AC136503.46 Medicago truncatula clone mth2-15n1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495741.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_004495742.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B22e-85NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLB7FI761e-155B7FI76_MEDTR; Nuclear transcription factor Y protein
STRINGGLYMA19G42460.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.44e-82nuclear factor Y, subunit C9