PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495455.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 142aa    MW: 16209.1 Da    PI: 9.3378
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495455.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.11.7e-212071256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +++GVr+++ +g+++AeIrdps++g  +r +lg+f+taeeAa+a+++a+ +l+g+
  XP_004495455.1 20 RFRGVRRRP-WGKYAAEIRDPSKQG--TRLWLGTFDTAEEAARAYDRAAYNLRGH 71
                    69*******.**********98865..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-322079IPR001471AP2/ERF domain
CDDcd000186.42E-202078No hitNo description
PROSITE profilePS5103224.5132078IPR001471AP2/ERF domain
PfamPF008473.3E-152071IPR001471AP2/ERF domain
SMARTSM003806.4E-372084IPR001471AP2/ERF domain
PRINTSPR003671.5E-112132IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-242179IPR016177DNA-binding domain
PRINTSPR003671.5E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MEDHQKGKHE KEEKGKEEVR FRGVRRRPWG KYAAEIRDPS KQGTRLWLGT FDTAEEAARA  60
YDRAAYNLRG HLAILNFPSE YYSKIRGSPP YPPHLAPPSS SHHANASGSS SAPQHRPIFE  120
FECLDDKILE ELLGSVDHKN KK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-33151289114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004495455.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495455.11e-102ethylene-responsive transcription factor ERF098
SwissprotQ9LTC55e-49ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S2XW821e-101A0A1S2XW82_CICAR; ethylene-responsive transcription factor ERF098
STRINGXP_004495455.11e-101(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-35ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]