PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495317.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 136aa    MW: 15084.6 Da    PI: 8.444
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495317.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-191868255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +g+++AeIrd +    + +r +lg+f taeeAa+a+++a+ +++g
  XP_004495317.1 18 KYRGVRCRP-WGKFAAEIRDSTR---QgQRMWLGTFNTAEEAARAYDRAAYSMRG 68
                    8*****999.**********322...24*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.49E-171877No hitNo description
SMARTSM003809.5E-351882IPR001471AP2/ERF domain
PfamPF008477.3E-141868IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-311878IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-231877IPR016177DNA-binding domain
PROSITE profilePS5103222.6421876IPR001471AP2/ERF domain
PRINTSPR003671.5E-101930IPR001471AP2/ERF domain
PRINTSPR003671.5E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MDKEGSRGSV KDDGGHVKYR GVRCRPWGKF AAEIRDSTRQ GQRMWLGTFN TAEEAARAYD  60
RAAYSMRGSF AILNFPNEYP MSVNAAGSSA TSASSSSSSS HANVEGRGRQ VFEFEYLDDK  120
LLDELLDFEK KNNKGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-401613512128Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004495317.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495317.23e-98ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC54e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S2XVY27e-97A0A1S2XVY2_CICAR; ethylene-responsive transcription factor ERF096-like
STRINGXP_004495317.14e-97(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.14e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]