PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495287.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 225aa    MW: 25356.4 Da    PI: 8.9418
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000123254123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H+++H
  XP_004495287.1 32 YSCSFCKREFRSAQALGGHMNVH 54
                    99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.24E-62958No hitNo description
Gene3DG3DSA:3.30.160.609.1E-43057IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0063254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.243259IPR007087Zinc finger, C2H2
PfamPF139124.5E-63255IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEGNYVNRNT SHHENLGFEE HSWGTSWPAR NYSCSFCKRE FRSAQALGGH MNVHRRDRAR  60
LRSSLISSSS SSWNNISDQC PNNNIKPNPT NTTTTSLLLS SPSPLSNDLL MNCSHPSSSS  120
SSLFLTLSSS PSLAPNNPFY EKKPRLTTPS LSLPLLSPQR SEIMMMSKSS RRSTTTLGVE  180
EMKGYEKEVK MNNVFMNNEQ NITLELGIGL FKHQQEEKLD LELRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-122754229superman protein
2l1o_A3e-122754229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004495287.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495287.11e-163transcriptional regulator SUPERMAN
TrEMBLA0A1S2XXP31e-162A0A1S2XXP3_CICAR; transcriptional regulator SUPERMAN
STRINGXP_004495287.11e-163(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-19C2H2 family protein