PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495148.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 285aa    MW: 30833.9 Da    PI: 6.4055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495148.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.1e-10135179554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  XP_004495148.1 135 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 179
                     99***********************55......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-15128189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-15132189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-7135179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSNHPSETPA DDFLEQILGL PNFTSTDGTD ASSLAAPMML QLNSGDAANH LAAGTGFHTP  60
VYHLGLSLDQ GKGGFLKPDD ASGSGKRFRE DVVDTRPKMN TFHGQPMPTT VPTAPHPPAM  120
RPRVRARRGQ ATDPHSIAER LRRERIAERI RALQELVPSV NKTDRAAMLD EIVDYVKFLR  180
LQVKVLSMSR LGGAGAVAPL VTDIPLSSVE EEGSDSGRNQ PAWEKWSNDG TEKQVAKLME  240
ENVGAAMQFL QSKALCIMPI SLASAIYQSQ PSDSSSIVKP ETTPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004495148.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495148.10.0transcription factor UNE12-like
SwissprotO227681e-128UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1S2XVK70.0A0A1S2XVK7_CICAR; transcription factor UNE12-like
STRINGXP_004495148.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-107bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]