PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495133.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 351aa    MW: 39719.9 Da    PI: 10.2828
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-31285343360
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+k
  XP_004495133.1 285 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHPK 343
                     99***********************9988****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.3E-17236281IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.9E-33271343IPR003657WRKY domain
PROSITE profilePS5081129.998278344IPR003657WRKY domain
SuperFamilySSF1182905.1E-27281343IPR003657WRKY domain
SMARTSM007744.7E-38283343IPR003657WRKY domain
PfamPF031065.4E-27285342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEEIEQANRT AVESCHRVLS MLSQPRDQVH HRNLMLETGE AVNRFKKVVS LLHNGLGHAR  60
VRKFKKHQQF PFSQTQTIFL DNPICKTNTK NLHFPQTNYP LENSSNPELA LTIRNPLSLG  120
NSSLELSTNG KSPLHLAQQA ASNHYHFIQQ QQQQRLLLQQ QQQQQQMKHQ AEMMFRRSTS  180
GINLNFDNTS CTPTMSSTRS FISSLSIDGS VANLDGSSFH LIGAPHSSDQ NSQQHKRKCS  240
ARGDEGSLKC GSSSKCHCSK KRKHRVKRSI KVPAISNKLA DIPPDDYSWR KYGQKPIKGS  300
PHPRGYYKCS SMRGCPARKH VERCLEEPTM LIVTYEGEHN HPKLPTQPAN A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-202793451075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004495133.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495133.20.0LOW QUALITY PROTEIN: probable WRKY transcription factor 21
SwissprotO043361e-125WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A1S2XVJ20.0A0A1S2XVJ2_CICAR; LOW QUALITY PROTEIN: probable WRKY transcription factor 21
STRINGXP_004495133.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.13e-80WRKY DNA-binding protein 74