PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 355aa    MW: 40568.9 Da    PI: 4.7999
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494014.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ C +sFs+   L  H+r+H
  XP_004494014.1  4 YNCKLCYRSFSNGRALGGHMRSH 26
                    89********************9 PP

2zf-C2H214.30.00012229251123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k+F++   L  H  +H
  XP_004494014.1 229 YKCETCNKVFKSYQALGGHRASH 251
                     9************9999998887 PP

3zf-C2H212.20.00055278300123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C ++Fs+   L  H rtH
  XP_004494014.1 278 HECPVCFRVFSSGQALGGHKRTH 300
                     79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.33E-5328No hitNo description
SMARTSM003550.092426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.284426IPR007087Zinc finger, C2H2
PfamPF139123.1E-8427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576677.47E-9228300No hitNo description
PfamPF139126.0E-12228253IPR007087Zinc finger, C2H2
SMARTSM003550.01229251IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367229256IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
SMARTSM003550.15278300IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452278300IPR007087Zinc finger, C2H2
PfamPF139127.3E-11278300IPR007087Zinc finger, C2H2
PROSITE patternPS000280280300IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDKYNCKLCY RSFSNGRALG GHMRSHMMNL IVNKQEEKSS RTIQLSFEAE SAPSSTSEED  60
NDCYEKDLCY PKRNIPHINQ DFTIDNDSIL PDRESETESS KNNPTRKRSK RLWKIRGFDP  120
NYYDESVMKK VKFCNKTESS VVEYEPASSV SNATTDEDVA FCLMLLSRDK WNKEGDYNEE  180
DEIDDEVDED PEEEEDEEED KIERSLEESD ESQEQIKVIK NNKLRKGRYK CETCNKVFKS  240
YQALGGHRAS HKKIKLMNIN VEESPPEFES GIVEKKIHEC PVCFRVFSSG QALGGHKRTH  300
VIHGSSTTTT TVPILSSTKI GKSVIDLNLP APIDDDDVSQ IENSAVSDAE FVKTR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494014.10.0zinc finger protein ZAT9-like
TrEMBLA0A1S2XU530.0A0A1S2XU53_CICAR; zinc finger protein ZAT9-like
STRINGXP_004494014.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-60C2H2-like zinc finger protein