PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493863.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 489aa    MW: 54534.2 Da    PI: 5.8206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493863.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.8e-16277323455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  XP_004493863.1 277 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 323
                     6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-19271331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-20271330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.36E-17276327No hitNo description
PfamPF000101.1E-13277323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-17279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MDQQQYPIPR PNKPSIADDE IMELLWQNGQ VVTQTQNHRY LRKPPPGTDS TRGGTLSAKE  60
ENYNQHLFMQ EGEMASWLHY PINDDDDSPF DQTFSADFLN PPPTVNNNRI MQNPHHTSQL  120
TELRQTPMSA VPPRPPIPPP RKLDQVPQNF AYFARHSVRT EPGPSSISRT AVNESTGVDS  180
CDTPAVQPVS ETVRSSAELT EGGTGLEAPS MTCDEPGGSS SSGEAVRKVA EQERKRKGRE  240
AEEWEDQSED VDFESAEAKR NICGSSSSVK RSRAAEVHNL SERRRRDRIN EKMKALQELI  300
PRCNKSDKAS MLDEAIEYLK SLQLQVQRVQ LMQMMSMGCG MVPMMFRGIQ QYMPTIGMGM  360
GMSMEMGMNR PVMPFPNMLT GLALPAAAAA HLGPRFPMPP FHVPQVPTPD SSRTQAANQS  420
DVNVLTSVGT PDPNHSCIPN FTDPYQQYLG PHQMQFQLMQ NQAINQPNNN KPGISRPPEN  480
PETRQSGDK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281286ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493863.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493863.10.0transcription factor PIF1-like isoform X3
RefseqXP_004493864.10.0transcription factor PIF1-like isoform X3
TrEMBLA0A1S2XSH70.0A0A1S2XSH7_CICAR; transcription factor PIF1-like isoform X3
STRINGAES816930.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-51phytochrome interacting factor 3-like 5