PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493725.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 310aa    MW: 35758.5 Da    PI: 7.1178
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493725.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.41.3e-34411322102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+++ +ed+++ +++sws+ g+sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll +
  XP_004493725.1  41 FLTKTFDAVEDPTTCHIVSWSRGGSSFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGHKQLLAN 126
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+++
  XP_004493725.1 127 IKRRRQ 132
                     ***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-5837130IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.2E-3837130IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.03E-3537130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-184164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3141130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-187991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-1892104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MNYLYPVKEE YLEVEGGSDE GTMVAIPRPM EGLHEVGPPP FLTKTFDAVE DPTTCHIVSW  60
SRGGSSFVVW DPNAFSRDLL PRYFKHNNFS SFVRQLNTYG FRKIDPDRWE FANEGFLRGH  120
KQLLANIKRR RQISQPSTSQ QSSQGHCVEV GNFGLDEEID HLRRDKQVLM MELVKLRQQQ  180
QNTRSYLQAM EERLRGIEIK QQQMMAFLAR AMKNPAFIQQ LVQQKEKRKE IEEAITKKRR  240
RPIEYGTSYV GESSIGGEYG RNCVKFGFEV SELEVLAMEM QGLGKGRREI EEENEVGFAA  300
DAWTRTCGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-263913018120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226240KRKEIEEAITKKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493725.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-118HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A072U2931e-170A0A072U293_MEDTR; Heat shock transcription factor A3
STRINGGLYMA19G34210.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-119heat shock transcription factor A6B