PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493429.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 254aa    MW: 29177.5 Da    PI: 9.9147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493429.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-1368120155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ +hn+ Er RR++iNs ++ Lr+llP  +   + kK+s   +  ++ +YI +Lq
  XP_004493429.1  68 KKLNHNASERDRRKKINSLISSLRSLLPGeD---HTKKMSIPVTISRVLKYIPELQ 120
                     6789*************************55...7777***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.12667119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-468124No hitNo description
Gene3DG3DSA:4.10.280.104.4E-1368137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1568139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-1168120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-1073125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVAFCSPQLS YSNMGWLLEE VEAESLLLSH KKNYVSLDYS LPHQFSSQKQ HVEIERTSPS  60
PSPNLVVKKL NHNASERDRR KKINSLISSL RSLLPGEDHT KKMSIPVTIS RVLKYIPELQ  120
KQVEGLIKQK EELLSRISRQ EYKVNKESQK KIPNYNSSFV VSTSRLNDTE LAIHISSYEA  180
HKIPLSEILL CLEDNGLFLL NSSSSKTFGG RLFYNLHFQV TKTQILESDV LIQKLLSIYE  240
KQRSNQFRLG TSVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004493429.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1254781e-116AC125478.14 Medicago truncatula clone mth2-31i19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493429.10.0transcription factor bHLH100
TrEMBLA0A1S2XRJ60.0A0A1S2XRJ6_CICAR; transcription factor bHLH100
STRINGXP_004493429.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-44bHLH family protein