PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492886.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 301aa    MW: 34686.4 Da    PI: 4.6705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09124170455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ +++  L  ++P +     kK++K  +L +A++Y k+Lq
  XP_004492886.1 124 DHLMAERKRRKELTESIIALSAIIPGL-----KKMDKCYVLNEAINYTKHLQ 170
                     5889***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.129120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-14124180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-14124185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7125170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-7125174No hitNo description
SMARTSM003538.9E-10126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEDLLESLSS YMEMEDDELN QNNSSIDDEQ EFLKDIMLEQ PECNATSPTN SILPFDEKSN  60
SSNSIMSLER CVCSPATYLL SFDNSSVEPI IEQMSNKRSH DGVEFEPKVN QATKRVKRES  120
EIQDHLMAER KRRKELTESI IALSAIIPGL KKMDKCYVLN EAINYTKHLQ QRIKELENQN  180
IDKRVKDPAI FIWKSQASSN KSTTSTYCER NTELLLEVEA RVLEKEVLIK IHCENQNDIV  240
LKIHELLEKF NLTITTSSIL PFGASILVIN IFAQMDEENS MTMDDLVKNL RKHVLEAHDR  300
Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134RKRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492886.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492886.10.0transcription factor bHLH18-like isoform X2
TrEMBLA0A1S2XQF00.0A0A1S2XQF0_CICAR; transcription factor bHLH18-like isoform X2
STRINGXP_004492885.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-32bHLH family protein