PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492662.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 182aa    MW: 20303.2 Da    PI: 7.8833
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492662.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.63e-36111131100
          DUF260   1 aCaaCkvlrrkCakd.Cvlapyfpa..eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                     +C aCk+lrrkC+kd C++apyf +  e +++fa++hk+FGasn +kll ++p ++r da+ sl+yeA ar+ dPvyG+v++i++lqqq+ +l+a
  XP_004492662.2  11 PCGACKFLRRKCVKDsCIFAPYFESsvEGTAHFAAIHKVFGASNASKLLMQIPLHKRLDAVLSLCYEALARVTDPVYGCVAHIFALQQQVVKLQA 105
                     7***********9988*******7733558***************************************************************** PP

          DUF260  93 elallkee 100
                     ela+++++
  XP_004492662.2 106 ELAHAQAR 113
                     ***99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.12810114IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3511111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEFECGRSGG PCGACKFLRR KCVKDSCIFA PYFESSVEGT AHFAAIHKVF GASNASKLLM  60
QIPLHKRLDA VLSLCYEALA RVTDPVYGCV AHIFALQQQV VKLQAELAHA QARLSILKRI  120
SIDPQFQHPQ SSSLSPNQHS SLLDHRHHHV SSNNEINDYM SMHFDNHHPT PFDITNLLNP  180
SS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492662.21e-134PREDICTED: LOB domain-containing protein 19
SwissprotO813226e-56LBD31_ARATH; LOB domain-containing protein 31
TrEMBLG7L0B72e-88G7L0B7_MEDTR; LOB domain protein
STRINGVIT_15s0048g00840.t011e-59(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.16e-57LOB domain-containing protein 31