PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492639.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 222aa    MW: 23370.5 Da    PI: 8.139
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492639.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.93.9e-39171171100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf ae+ + +fa+vhk+FGasnv+kll  +p ++r da+ sl+yeA+ r+rdPvyG+vg+i++lqqq+++l+ae+
  XP_004492639.1  17 PCGACKFLRRKCVQGCIFAPYFDAEHgTTHFAAVHKVFGASNVSKLLLGIPINKRLDAAISLCYEAQTRLRDPVYGCVGHIFTLQQQVMSLQAEI 111
                     7*********************999979******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+++
  XP_004492639.1 112 NYLQSH 117
                     *99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.15916118IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3817115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSLTSSGGGG GSGSGSPCGA CKFLRRKCVQ GCIFAPYFDA EHGTTHFAAV HKVFGASNVS  60
KLLLGIPINK RLDAAISLCY EAQTRLRDPV YGCVGHIFTL QQQVMSLQAE INYLQSHLTS  120
TELTQPLLLP PPQAATAPAV FSLADLPSAT AATMPVTYDM STLFDPLGQP SLPMQQQRPN  180
IDPRQYLAAH GPTSTTNAGQ HGSSSVPSSD ASSSLSLSKF SK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492639.11e-162PREDICTED: LOB domain-containing protein 18
SwissprotO221313e-63LBD18_ARATH; LOB domain-containing protein 18
TrEMBLG7L0952e-96G7L095_MEDTR; LOB domain protein
STRINGGLYMA18G45320.11e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.18e-63LOB domain-containing protein 18