PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491406.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 156aa    MW: 17999.4 Da    PI: 8.2741
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491406.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.26.4e-3951051101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk +rr+C++dC+++pyfpa++p++fa+vh+++G snv k+l++lp+  re+a+++l+ eA++r++dPvyG+vg+i+kl qq++ +++ela
  XP_004491406.1   5 RCAACKSQRRRCPSDCIFSPYFPANDPQRFAYVHRIYGGSNVGKMLQQLPHYVREQAANTLYLEAQCRIQDPVYGCVGIISKLYQQIHDTEVELA 99 
                     6********************************************************************************************** PP

          DUF260  96 llkeel 101
                     ++++++
  XP_004491406.1 100 KIQTQI 105
                     *99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.8674105IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-385102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MIYGRCAACK SQRRRCPSDC IFSPYFPAND PQRFAYVHRI YGGSNVGKML QQLPHYVREQ  60
AANTLYLEAQ CRIQDPVYGC VGIISKLYQQ IHDTEVELAK IQTQIACHKN KNSRVEVQSN  120
FNILSTIDAE SNLNFLPPQG NNMEFQWPSQ SFNWFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-33610512111LOB family transfactor Ramosa2.1
5ly0_B1e-33610512111LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00381DAPTransfer from AT3G26620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004491406.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1798947e-64CU179894.1 Medicago truncatula chromosome 5 clone mth4-21m22, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491406.11e-116LOB domain-containing protein 23-like
SwissprotP594672e-46LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594683e-46LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A1S2XPB01e-114A0A1S2XPB0_CICAR; LOB domain-containing protein 23-like
STRINGXP_004491406.11e-115(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.17e-49LOB domain-containing protein 23