PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490261.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 336aa    MW: 37165.5 Da    PI: 6.9507
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.9e-164796255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  XP_004490261.1 47 RSKHSVTEQRRRSKINERFQILRDLIPQC----DQKRDTASFLLEVIEYVQYLQ 96
                    899*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.2724595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-2446118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-1946116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-1447100No hitNo description
PfamPF000101.1E-134796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-1251101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MKAGKVNHEE DEYDEEDFNS LKKQGSSSAP NTNNKDGKAT DKASVIRSKH SVTEQRRRSK  60
INERFQILRD LIPQCDQKRD TASFLLEVIE YVQYLQEKVQ KYEGSYQGWN QETSKLMPWR  120
NSHWRVQNIV GQPPAVKNGS GLVSPFPGKF DESNVSISPT MLSGTQCMIE PEQSRDIVSK  180
IAERQPDLAS KGIPLPMAMH ANMSVPVRSD GVLAHPLQGT VSDAQSTECP ATSEQLNHQD  240
ELTVEGGTIS ISSVYSQGLL NNLTQALQSA GLDLSQANIS VQIDLGKRAN KAPSGTTSSP  300
KNHDNPVCSN QAIAHFRDGI IREDSDQALK RMKTYK
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490261.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0530190.0BT053019.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-B-11 unknown mRNA.
GenBankBT1335880.0BT133588.1 Medicago truncatula clone JCVI-FLMt-12L3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490261.10.0transcription factor BIM2
SwissprotQ9CAA41e-113BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A1S2XJG10.0A0A1S2XJG1_CICAR; transcription factor BIM2
STRINGXP_004490261.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-116BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]