PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 278aa    MW: 31890.6 Da    PI: 6.3531
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.5e-1874127356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++ +LA+ l+L+ rq+ +WFqNrRa++k
  XP_004490019.1  74 KKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQIAIWFQNRRARWK 127
                     456899***********************************************9 PP

2HD-ZIP_I/II130.46.9e-4273164192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+ eqvk+LE+sFe  +kLeperK++lar+L+lqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+yda+k +n++L++++++L++el 
  XP_004490019.1  73 EKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDAVKLDNDALQTQNQKLQAELL 164
                     69**************************************************************************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-1965131IPR009057Homeodomain-like
PROSITE profilePS5007117.29769129IPR001356Homeobox domain
SMARTSM003897.4E-1872133IPR001356Homeobox domain
CDDcd000861.56E-1574130No hitNo description
PfamPF000464.0E-1574127IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-1876136IPR009057Homeodomain-like
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
PfamPF021835.7E-16129169IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAFFQANFML QTPHHHDDHH HPPPSLNSIL PQDYHGGPSF LGKRSMSFSS GIELGEEVNA  60
EEDLSDDGSQ AGEKKRRLNM EQVKTLEKSF ELGNKLEPER KMQLARALNL QPRQIAIWFQ  120
NRRARWKTKQ LEKDYDVLKR QYDAVKLDND ALQTQNQKLQ AELLALKNRE PIESINLNIK  180
ETEGSSSNRS ENSSDIKLDI SRTQASDSPL STHHTFFPPS ARPAGIAQLF QTTSSSRPEI  240
QCQKIDQMVV KEESLSNMFC GMDDQTGFWP WLEQQHFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121129RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490019.10.0homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-115ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A1S2XIW90.0A0A1S2XIW9_CICAR; homeobox-leucine zipper protein ATHB-13
STRINGXP_004490019.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127133106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-105HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]