PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489657.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 222aa    MW: 24110.9 Da    PI: 7.931
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.4e-39371381101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+ +C++apyf  +q +++fa+vhk+FGasnv+kll+++p+++r++a++++ yeA+ar++dPvyG+v++il+lqqq++ ++ae+
  XP_004489657.1  37 PCGACKFLRRKCSGGCIFAPYFGTDQgAARFAAVHKVFGASNVSKLLNNIPTNHRHEAAATISYEAQARLSDPVYGCVSTILALQQQVAAMQAEV 131
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     ++++++l
  XP_004489657.1 132 SMMQNQL 138
                     **99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.54636138IPR004883Lateral organ boundaries, LOB
PfamPF031955.8E-3937135IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MADSQGDGTS GARRSKGANA TKRAMTGVTQ ETLVIAPCGA CKFLRRKCSG GCIFAPYFGT  60
DQGAARFAAV HKVFGASNVS KLLNNIPTNH RHEAAATISY EAQARLSDPV YGCVSTILAL  120
QQQVAAMQAE VSMMQNQLMN SRFAYASALQ TTHQQHHQML QQPNFNVSVQ PAYSNNSSAS  180
TNNLMNINNF NPGFDLTMET VPSSHSLEPF QNSRLSHYEE DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-383614010113LOB family transfactor Ramosa2.1
5ly0_B5e-383614010113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489657.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568165.11e-167LOB domain-containing protein 20
SwissprotQ9SRV34e-65LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A1S2XI101e-165A0A1S2XI10_CICAR; LOB domain-containing protein 20
STRINGXP_004489657.11e-166(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.18e-55LOB domain-containing protein 20