PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489468.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 261aa    MW: 29757.3 Da    PI: 6.9222
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489468.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1012e-31441642104
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg. 88 
                      g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl+ ak +i+el+ ++ ++++++       ++++s  +++    + 
  XP_004489468.1  44 FGGKDRHSKVCTIKGLRDRRVRLSIQTAIHLYDLQDRLGLNQPSKVVDWLLNVAKDEIDELPPLQIPQENFTlgypsfnDDNTSIWKSN----Pk 134
                     689*************************************************************8888877755543321111111111....12 PP

             TCP  89 ..............kaaksaakskksqksa 104
                                   +++++++ ++++ ++a
  XP_004489468.1 135 qvlgemvnhkenwiNKSEEDKVENNDFHDA 164
                     334444444444444444444444444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.4446104IPR017887Transcription factor TCP subgroup
PfamPF036343.5E-2946157IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MINIQKEEDF PLKAKASTIS SSSSSSQWLQ LKDHPRIVRV SRAFGGKDRH SKVCTIKGLR  60
DRRVRLSIQT AIHLYDLQDR LGLNQPSKVV DWLLNVAKDE IDELPPLQIP QENFTLGYPS  120
FNDDNTSIWK SNPKQVLGEM VNHKENWINK SEEDKVENND FHDAQHVLTN QPSFLGLLNN  180
SMPLAYHQLQ PSIRDIHYGI NVVPFPSSLS LSTQQYFPSH VVGAMDMDPR QINYNYDQMM  240
SSSSQNKFSQ SNSTIHHEGG S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1751105155Putative transcription factor PCF6
5zkt_B1e-1751105155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489468.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489468.10.0transcription factor TCP13
RefseqXP_004489469.10.0transcription factor TCP13
TrEMBLA0A1S2XK750.0A0A1S2XK75_CICAR; transcription factor TCP13
STRINGXP_004489468.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-46plastid transcription factor 1