PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489051.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 301aa    MW: 33438.5 Da    PI: 6.9134
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489051.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.32.2e-3717127289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasnsss 87 
                      g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai++l+++         ++      ++++++ +++  ++
  XP_004489051.1  17 RGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKALDWLINKAKPAIDQLAQLppwkptlltKQ------QQNDDVPQNQ--NE 103
                     689*************************************************************44444333311......1111111111..11 PP

             TCP  88 g......................k 89 
                     +                       
  XP_004489051.1 104 HefhflqnfnsnnnnflpfdtetT 127
                     122333332222233333433220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.2E-3318119IPR005333Transcription factor, TCP
PROSITE profilePS5136933.8611977IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSGEIVEVDG GHIIRSRGRK DRHSKVCTAK GPRDRRVRLS AHTAIQFYDV QDRLGYDRPS  60
KALDWLINKA KPAIDQLAQL PPWKPTLLTK QQQNDDVPQN QNEHEFHFLQ NFNSNNNNFL  120
PFDTETTSSS PIHFQSYSTH DDLRLSLQQH QNQHVHPHVL FAGNLDGMVA WNSGATIDTG  180
SNNNNNNHHH DDVNSGGGFV FHAATPSPAV FPAVMYGQNQ YLSQRGPLQS SNTSSVRAWI  240
DAPTFVAADH RRGHAVAMSG TGFVSDSFSG FRVPARIGGD EEEEHDGLSD RPSSASSDSR  300
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-202477154Putative transcription factor PCF6
5zkt_B4e-202477154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489051.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489051.10.0transcription factor TCP4-like
SwissprotQ9MAH86e-70TCP3_ARATH; Transcription factor TCP3
TrEMBLA0A1S2XJ940.0A0A1S2XJ94_CICAR; transcription factor TCP4-like
STRINGXP_004489051.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2416233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-47TCP family protein
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]