PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 252aa    MW: 28564.9 Da    PI: 6.7287
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489021.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-055678123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C k F++   L  H+++H
  XP_004489021.1 56 YTCSFCRKEFKSAQALGGHMNVH 78
                    9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-65382No hitNo description
Gene3DG3DSA:3.30.160.604.5E-45480IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0035678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3445683IPR007087Zinc finger, C2H2
PfamPF139129.1E-65679IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MMKRNNLSTN LKGYNTYKSE MTKEFCDLNS QSNNNNNNGS SCEDYMNGFP WPPRSYTCSF  60
CRKEFKSAQA LGGHMNVHRR DRARLRQSSP IEVQVQQPQT QNQGSMLNFN LNNHPIITTT  120
NPYNNFFSNS SLSLFQPSSS SSSATTLKPI TCTLPLFVSS SSTSPSPSPC EFNKYILLNP  180
LSTKTKEPFI NSKMVEESLS RVGECDDFAC EDDECRMLKK SEILRMDLEI GLPRDYDDNL  240
DLELRLGTTT YS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-135178229superman protein
2l1o_A7e-135178229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1515982e-53AC151598.2 Medicago truncatula chromosome 2 clone mte1-49g8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489021.10.0transcriptional regulator SUPERMAN-like
TrEMBLA0A1S2XIF70.0A0A1S2XIF7_CICAR; transcriptional regulator SUPERMAN-like
STRINGXP_004489021.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-23C2H2 family protein