PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488302.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 314aa    MW: 36033.7 Da    PI: 4.4632
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.95.5e-13952144
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    kri+n+  r++tf  R+ng+ KK +E S   +aev++i++ s+g
  XP_004488302.1  9 KRIQNEKVRKTTFVHRKNGLSKKVSEFSSIFGAEVCLIVYDSDG 52
                    79**************************************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.4E-13160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-17177IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.283161IPR002100Transcription factor, MADS-box
CDDcd002665.98E-17276No hitNo description
PRINTSPR004042.8E-7323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-131052IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRPKTNLKR IQNEKVRKTT FVHRKNGLSK KVSEFSSIFG AEVCLIVYDS DGSDIPMTFP  60
ENATTVQSML KKYEHQKIET TLEEFGVKDY YANKKNLVEA EISRVRKEIL KKKYPTSSPI  120
FHNMEEEQLK AFIAFVDSKI EACNHMLKNM QQKDTCFVQN MAQDSDVCLH SSQDNVVMHN  180
LPQMQHITDF MEPTNDDISE WIDFSDLSDL PPVSSINQLS KLVEWDDIKV ESEGFTSFIH  240
STMQNITYDN VLSSNSSQLD VNHNIPQIQN ITGCMLPPYD DICDMVDFSG LIDWDNIVAE  300
PEDFTVVEDD FLCI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004488302.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488302.10.0floral homeotic protein GLOBOSA-like
TrEMBLA0A1S2XEY10.0A0A1S2XEY1_CICAR; floral homeotic protein GLOBOSA-like
STRINGXP_004488302.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-15AGAMOUS-like 82