PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488298.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21647.7 Da    PI: 8.0835
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488298.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.21.8e-07937129
                    S---SHHHHHHHHHHHHHHHHHHHHHHHH CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSv 29
                    kri+n+  r++tf  R++g+ KK  E S 
  XP_004488298.1  9 KRIQNEKARKTTFVHRKKGLSKKVLEFSS 37
                    79**********************99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.895142IPR002100Transcription factor, MADS-box
SMARTSM004320.0066148IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.15E-9142IPR002100Transcription factor, MADS-box
PfamPF003192.4E-71042IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGHAKTNMKR IQNEKARKTT FVHRKKGLSK KVLEFSSIFG AEHQKIKTTI EEFGVKDYYA  60
NKKNLVEAQI SRVRKEILKK KYPTSSPIFH NSEEKQLKAF SAFIDSKIET NQLSKLVDWD  120
DMKVESEEFT SFIQNTMQNI TYDNVLSSHL GQLDVNHNIS QMQNITGCML PLYDDICDFV  180
DCTDLID
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004488298.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488298.11e-138uncharacterized protein LOC101513970
TrEMBLA0A1S2XH361e-137A0A1S2XH36_CICAR; uncharacterized protein LOC101513970
STRINGXP_004488298.11e-137(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111