PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487558.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 296aa    MW: 32796.5 Da    PI: 8.496
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487558.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024214236123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_004487558.1 214 HECSICGAEFTSGQALGGHMRRH 236
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.36E-8126149No hitNo description
PROSITE profilePS5015710.596127154IPR007087Zinc finger, C2H2
PfamPF139123.3E-12127151IPR007087Zinc finger, C2H2
SMARTSM003550.13127149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
SuperFamilySSF576673.36E-8209236No hitNo description
PfamPF139121.2E-12214238IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723214236IPR007087Zinc finger, C2H2
SMARTSM003550.01214236IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEGIGGIEEH VSDATHLVKG KRTKRRLRSL SPYTVVTTTV ISSCSSATGD NIGGGSFSST  60
TFEGIDQEEE TDMANCLILL AQGRVGREQE NNKRRLQNHQ QQSENHVDGY GYNKITEKAT  120
KNGYDIYECK TCNRSFHSFQ ALGGHRASHK KPKMKEEKNS CEIDEANKHN HTKKNSINIS  180
PMVPPVSLEL RCGVNINFNG HGNDKKPNRP NKIHECSICG AEFTSGQALG GHMRRHRASI  240
NNNTNHHNNN KVGVHVKSRN VLELDLNLPA PENDIQDSTF QFPVVTASPA LVGCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487558.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX873746e-38X87374.1 P.sativum putative zinc finger protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487558.10.0zinc finger protein ZAT5-like
TrEMBLA0A1S2XG870.0A0A1S2XG87_CICAR; zinc finger protein ZAT5-like
STRINGXP_004487558.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.17e-52C2H2 family protein