PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487179.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 339aa    MW: 37639.1 Da    PI: 6.6433
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487179.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.48.9e-37221362110
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssaseceaesssssasnsssg..... 88 
                     +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++   + +++    +++++ +++++++g     
  XP_004487179.1  22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELppwNPIPN----NVTEELQQEENNAGtrdmv 112
                     79**************************************************************55433333....3344444443333345556 PP

             TCP  89 ...kaaksaakskksqksaasalnl 110
                        + ++++   +++ +++++++n 
  XP_004487179.1 113 iaaE-NSESSGYNFQLQDTENHHNH 136
                     6531.22222333444444333433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-3322130IPR005333Transcription factor, TCP
PROSITE profilePS5136933.1722482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGMKSTGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKSAID KLAELPPWNP IPNNVTEELQ QEENNAGTRD MVIAAENSES  120
SGYNFQLQDT ENHHNHSAFI PSNIDTDAIA FFPTSSAASS INFQSYPSDI ISRTNNSIQD  180
LGLSLHSFQD HGMMHGQSQE GGNHQTGSND HHQTLFTDSN PVGFEANYHR IVNWNNDDHR  240
TGFMVNSAPF LSQGSAFSHR GTLQSSFSQS LRPWNDIPME TSSVNHNQKS QQIQQASIFG  300
SRFLSDALPG FCIPARIQGE DESHVVVSDR PSSSSNSHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-232982154Putative transcription factor PCF6
5zkt_B5e-232982154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487179.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487176.10.0transcription factor TCP4-like
RefseqXP_004487177.10.0transcription factor TCP4-like
RefseqXP_004487178.10.0transcription factor TCP4-like
RefseqXP_004487179.10.0transcription factor TCP4-like
RefseqXP_004487180.10.0transcription factor TCP4-like
TrEMBLA0A1S2XCF00.0A0A1S2XCF0_CICAR; transcription factor TCP4-like
STRINGXP_004487176.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.39e-69TCP family protein