PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YC
Protein Properties Length: 223aa    MW: 25757.1 Da    PI: 5.0466
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486310.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC152.29.7e-48711722100
           NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                     l++fw++q   ie+++++ nh lPlarikk++k+de+v+misae+Pvl++kace+fi+e+t+rsw hae n+++t++ksdia+a+++td+fdflv
  XP_004486310.1  71 LENFWINQnheIEESNNLGNHCLPLARIKKVMKSDEQVSMISAEVPVLFAKACEMFIMEMTMRSWAHAEMNQKKTIQKSDIASAISSTDVFDFLV 165
                     899***999999*********************************************************************************** PP

           NF-YC  94 divprde 100
                     divpr+e
  XP_004486310.1 166 DIVPREE 172
                     *****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.26E-2958164IPR009072Histone-fold
PfamPF008083.8E-1993155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.9E-3493170IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MNQKRQEEEE EGNEETQSES ESKQIVAISR PLIQTPGASA FSCYLNRDKL PKYFRHSILQ  60
QQKQQELKKK LENFWINQNH EIEESNNLGN HCLPLARIKK VMKSDEQVSM ISAEVPVLFA  120
KACEMFIMEM TMRSWAHAEM NQKKTIQKSD IASAISSTDV FDFLVDIVPR EEDTMDHEIF  180
RRRESVPYYY VPLPPHHAAP PGMFMGTPEL LPNPNQENGD SSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-37591707119HapE
4g92_C3e-37591707119HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486310.11e-168PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ9SMP05e-53NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLI3TAY73e-65I3TAY7_MEDTR; Core histone H2A/H2B/H3/H4
STRINGPOPTR_0005s09770.18e-53(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.27e-48nuclear factor Y, subunit C4