PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486291.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 307aa    MW: 34736.9 Da    PI: 6.2301
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486291.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43e-174897255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  XP_004486291.1 48 KFLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAQEAAFAYDRAALSIKG 97
                    678******.**********933...5***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-3248111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-2848105IPR001471AP2/ERF domain
PROSITE profilePS5103220.50848105IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2048106IPR016177DNA-binding domain
CDDcd000182.51E-2848104No hitNo description
PRINTSPR003671.9E-74960IPR001471AP2/ERF domain
PfamPF008473.1E-105097IPR001471AP2/ERF domain
PRINTSPR003671.9E-77187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSTSRTSNTS LKAYDQNQTQ INLSLLQRNT SPACGEKRGR RKQTEPGKFL GVRRRPWGRY  60
AAEIRDPNTK ERHWLGTFDT AQEAAFAYDR AALSIKGSQA RTNFIYSSSS NHHDHDTNLH  120
DLNVQSLLPS SNLNINNTTH NKKTQPTNHI EKQSSSNMNN DNMCHVHEPY DNFFFSNDSY  180
KSGYLECIVP VNCFNPVSNF GNASASSEQQ QNVVDSISTT NFGQSFFDYN AFSQQDLSMQ  240
KMATSETSDQ DLWDYCNYNE LSAIFNKPVR SEEESCMYAL CPSMTTNDVS STTYSSFGDV  300
NMGYSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1939104571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486291.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1862951e-104AC186295.3 Medicago truncatula chromosome 2 BAC clone mth2-26g6, complete sequence.
GenBankAC2053911e-104AC205391.2 Medicago truncatula chromosome 2 BAC clone mth2-38p15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486291.10.0ethylene-responsive transcription factor ERF086
TrEMBLA0A1S2XAH40.0A0A1S2XAH4_CICAR; ethylene-responsive transcription factor ERF086
STRINGXP_004486291.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.14e-47ERF family protein