PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485547.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 201aa    MW: 23360.1 Da    PI: 6.4147
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.13.1e-35111331128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelv ++L++k +       +vi+++++y+++Pw+L+ ++ ae ++wy++s+r++       +nr+t +gyWk tg +++v+++
  XP_004485547.1  11 LPPGFRFYPTDEELVLHFLHRKKTPLLPFHPDVIPDLHLYSYDPWQLHGRALAEGNKWYYYSRRST-------QNRVTCNGYWKPTGIEEPVFCS 98 
                     79******************9977766444499**************977778899******9865.......79******************98 PP

             NAM  96 .kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                      k++ +g+kk +vf+ g +++ g kt+W+mhe+rl
  XP_004485547.1  99 tKNNRIGIKKHFVFHMGeSDSVGIKTNWIMHEFRL 133
                     67788**********985667799*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-455165IPR003441NAC domain
PROSITE profilePS5100544.19111166IPR003441NAC domain
PfamPF023652.1E-2212133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDNNSINNVN LPPGFRFYPT DEELVLHFLH RKKTPLLPFH PDVIPDLHLY SYDPWQLHGR  60
ALAEGNKWYY YSRRSTQNRV TCNGYWKPTG IEEPVFCSTK NNRIGIKKHF VFHMGESDSV  120
GIKTNWIMHE FRLSHSSTNS SSSSSKIKSQ PIKDYSKWVI CRVYESKGDD DDDGTDQLSC  180
LDEVFLSSLD DFDEISLPNY N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-37216711169NAC domain-containing protein 19
3swm_B1e-37216711169NAC domain-containing protein 19
3swm_C1e-37216711169NAC domain-containing protein 19
3swm_D1e-37216711169NAC domain-containing protein 19
3swp_A1e-37216711169NAC domain-containing protein 19
3swp_B1e-37216711169NAC domain-containing protein 19
3swp_C1e-37216711169NAC domain-containing protein 19
3swp_D1e-37216711169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485547.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485547.11e-150NAC domain-containing protein 104
SwissprotQ8GWK62e-69NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1S2X9E31e-148A0A1S2X9E3_CICAR; NAC domain-containing protein 104
STRINGXP_004485547.11e-149(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-67xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]